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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs2006838 chr12:69816232 A/C 0.000197 405 15.18 16.33 10.5 KM Plot
LGG rs2006880 chr7:7568802 G/C 1.11E-16 406 2.23 15.33 15.35 KM Plot
LGG rs200700660 chr7:5088410 GA/G 0.000189 405 15.3 16.27 12.03 KM Plot
LGG rs200702433 chr2:86862819 T/TTTTTG 1.74E-14 398 15.9 10 6.83 KM Plot
LGG rs200836063 chr12:69712589 AGTT/A 0.000121 403 15.57 15.13 13.2 KM Plot
LGG rs200876752 chr6:151850010 G/GA 2.77E-8 404 15.35 15.7 3.77 KM Plot
LGG rs201063836 chr7:64925472 TA/T 1.27E-7 401 15.33 15.28 2.27 KM Plot
LGG rs201203266 chr2:201746550 TG/T 1.79E-6 405 15.17 17.2 4.45 KM Plot
LGG rs201353635 chr16:67845096 C/CGCCCA 2.53E-11 405 15.17 19 6.47 KM Plot
LGG rs201359633 chr3:153675611 A/C 0 397 15.17 18.7 0.23 KM Plot
LGG rs201402761 chr14:20750835 C/T 2.51E-5 391 15.5 15.63 8.07 KM Plot
LGG rs201544472 chr7:64930689 C/G 9.18E-8 401 15.57 15.07 2.27 KM Plot
LGG rs201859915 chr7:64931012 G/A 9.18E-8 401 15.45 15.2 2.27 KM Plot
LGG rs201964168 chr7:64932014 G/A 7.59E-8 399 15.57 15.07 2.27 KM Plot
LGG rs202165285 chr19:23506489 TCTC/T 2.65E-6 404 15.25 14.8 7.8 KM Plot